urakubo's Repositories

analyses_pips_camkii

Analysis code and dataset for "multiphasic protein condensation governed by shape and valency"

⭐ 0 🌐 Public

communication_between_Atsumi_Urakubo

Communication between Atsumi and Urakubo

⭐ 0 🌐 Public

Dojo-standalone

A standalone version of Dojo from Rhoana pipeline

⭐ 2 🌐 Public

ffn

Flood-Filling Networks for instance segmentation in 3d volumes.

⭐ 0 🌐 Public

ffn_windows

Windows10, 64bit版 ffn および Example dataset

⭐ 0 🌐 Public

Filled_ECS_Mesh

No description

⭐ 0 🌐 Public

GenerateTetrahedraMesh

STEPS simulation from FIB/SEM images

⭐ 0 🌐 Public

imagesegmentation-tensorflow

No description

⭐ 0 🌐 Public

imagetranslation-tensorflow

Tensorflow implementation of image-to-image translation using generative adversarial networks

⭐ 0 🌐 Public

LASSI

LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions

⭐ 0 🌐 Public

Lattice_Microbes

No description

⭐ 0 🌐 Public

llps

Internal: LLPS of CaMKII system

⭐ 0 🌐 Public

lm_extension

Extensions on lattice microbes

⭐ 0 🌐 Public

lsd

🌈

⭐ 0 🌐 Public

ModelRP

Signaling models for dopamine-dependent temporal contiguity in striatal synaptic plasticity

⭐ 0 🌐 Public

ModelRP2

The critical balance between dopamine D2 receptor and RGS for the sensitive detection of a transient decay in dopamine signal

⭐ 0 🌐 Public

Parajuli

Geometry and the placement of spine synapses along a dendrite

⭐ 0 🌐 Public

pytorch_connectomics

PyTorch Connectomics: segmentation toolbox for EM connectomics

⭐ 0 🌐 Public

RhoA-model

RhoA model for internal use

⭐ 0 🌐 Public

SpineCa_MultiTrials

Simulation of NMDAR-mediated Ca2+ signals on STEPS, Six trials.

⭐ 0 🌐 Public

tensorflow-windows-wheel

Tensorflow prebuilt binary for Windows

⭐ 0 🌐 Public

three-annotator

No description

⭐ 0 🌐 Public

UNI-EM

A unified environment for DNN-based automated segmentation of neuronal EM images

⭐ 38 🌐 Public

UNI-EM_annotator

UNI-EM annotator

⭐ 0 🌐 Public